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Prof.Dr. SEMRA KOCABIYIK
FACULTY OF ARTS AND SCIENCES
PublicationsResearchMembership & Awards
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Phone :  +90312210 3103
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Education

  Bachelor's, University of Ankara, Agricultural Eng.
  Master's, Middle East Technical University, Biology
  Doctorate, Middle East Technical University, Biology

Publications (INTERNATIONAL)

Journal Papers

  A.1 Kocabıyık, S and S.Turkoglu., A Thermostable Dehalogenase in the Extracts from Pseudomonas sp.(Strain 19S). "Biotechnol.Letters", 11(6), (1989), p.397-400.
  A.2 Kocabıyık, S., E.Akalin, and N.G.Alaeddinoglu., Aminoglycoside Resistance Profiles of the Gentamicin Resistant Enterobacteriaceae and Pseudomonas Strains. "Int. J. Experiment. Clin. Chemother", 2(2), (1989), p.118-124.
  A.3 Kocabıyık,S and N.G.Alaeddinoglu., Analysis of Plasmids Mediating ANT(2") and AAC(3)-II Based Gentamicin Resistance in Clinical Isolates of Enterobacteriaceae. "Zentralblatt für Bacteriologie", 271, (1989), p.214-221.
  A.4 Adwan , K., S. Kocabıyık , and N. G. Alaeddinoglu., Effect of Drug Usage on Aminoglycoside Susceptiblities of Pseudomonas aeruginosa Isolates. "Int. J. Experiment. Clin. Chemother", 3(3), (1990), p.179-183.
  A.5 Kocabıyık, S and M.H. Perlin., Site - Specific Mutations of Conserved C - Terminal Residues in Aminoglycoside 3'-Phosphotransferase II [ APH(3')-II]:Phenotypic and Structural Analysis of the Mutant Enzymes. "Biochem. Biophys. Res. Commun", 185(3), (1992), p.925-931.
  A.6 Adwan, K., S. Kocabıyık, and N. G. Alaeddinoglu., Evaluation of Plasmid DNA and Protein Profiles as Epidemiological Tools in Pseudomonas aeruginosa. "Int. J. Experiment. Clin. Chemother", 5(1), (1992), p.37-40.
  A.7 Kocabıyık,S and M.H.Perlin., Altered Substrate Specificities by Substitutions at Tyr 218 in Bacterial Aminoglycoside 3'- Phosphotransferase - II. "FEMS Microbiol. Letters", 93, (1992), p.199-202.
  A.8 Kocabıyık,S., C. Mullis, C.Breeding and M.H.Perlin., Structure-Function Analyses for Aminoglycoside 3'-Phosphotransferase-II[APH(3')-II]. "SAAS Bulletin: Biochem. Biotech", 5, (1992), p.158-163.
  A.9 Kocabıyık, S and M.H.Perlin., Amino Acid Substitutions within the Analogous Nucleotide Binding Loop (P-Loop) of Aminoglycoside 3' -Phosphotransferase-II. "Int.J.Biochem", 26(1), (1994), p.61-66.
  A.10 Kocabıyık,S, E.Ergin, and S.Turkoglu, Effects of Metals on Elastase from Pseudomonas aeruginosa SES-938-1. "Biological Trace Element Research", 50(1), (1995), p.25-31.
  A.11 Kocabıyık, S., A Modified Method for RNA Isolation from Bacteria by Guanidinium Thiocyanate - Cesium Chloride Centrifugation. "BioTechniques", 18(4), (1995), p.570-572.
  A.12 Kocabıyık,S, B. Aslan, and R. Muller., Cloning and Expression of a Haloacid Dehalogenase form Pseudomonas sp. Strain 19S. "Biodegradation", 6(3), (1995), p.217-222.
  A.13 Kocabıyık, S, I. Erduran, R.Russel, M.Danson and D.Hough, The Effect of Cysteine-43 Mutation on Thermosatability and Kinetic Properties of Citrate Synthase from Thermoplasma acidophilum. "Biochem.Biophys.Res.Commun", 224, (1996), p.224-228.
  A.14 Semra Kocabiyik.,Ebru Caba, Prevalence of Monochloroacetate Degrading Genotypes Among Soil Isolates of Pseudomonas sp.. "Biodegradation", 8, (1998), p.371-377.
  A.15 Ipek Erduran., Semra Kocabiyik, Amino Acid Substitutions in the Subunit Interface Enhancing Thermostability of Thermoplasma acidophilum Citrate Synthase .. "Biochemical and Biophysical Research Communications", 249, (1998), p.566-571.
  A.16 Ipek Erduran., Semra Kocabiyik, The Effect of Hydrophobic Interactions in the Dimer Interface of Thermoplasma acidophilum Citrate Synthase on Thermostability. "Journal of Protein Chemistry", 17, (1998), p.531-532.
  A.17 Kocabıyık,Semra., Erduran,İ, The Effect of Valine Substitution for Glycine in the Dimer Interface of Citrate Synthase from Thermoplasma acidophilum on Stability and Activity. "Biochemical and Biophysical Research Communications", 275, (2000), p.460-465.
  A.18 Arınç, E., Kocabıyık, S., Su,E, Induced CYPmRNA, protein and catalytic activity in the liver of feral fish, leaping mullet,Lisa saliens. "Comparative Biochemistry and Physiology C. Pharmacology, Toxicology and Endocrinology", 128(C), (2001), p.2181-290.
  A.19 S.Kocabıyık and B.Erdem:, Intracellular Alkaline Proteases Produced by Thermoacidophiles : Detection of Protease Heterogeneity by Gelatin Zymography and Polymerase Chain Reaction (PCR). 84:29-33, 2002.. "Bioresource Technology", 84, (2002), p.29-33.
  A.20 Semra Kocabıyık, İnci Özdemir, Purification and Characterization of an Intracellular Chymotrypsin-like Serine from thermoplasma volcanium.. "Biosciences, Biotechnology and Biochemistry", 70, (2006), p.126-134.
  A.21 S.Kocabıyık and H.Ozel, An extracellular pepstatin insensitive acid protease produced by Thermoplasma volcanium .. "Bioresource Technology", 98, (2007), p.112-117.
  A.22 S. Kocabıyık, B.Demirok, Cloning and Overexpression of a Thermostable Signal Peptide Peptidase (SppA) from Thermoplasma volcanium GSS1 in E.coli. "Biotechnology Journal", 4, (2009), p.1055-1065.
  A.23 Semra Kocabıyık, Essential Structural and Functional Features of Small Heat Shock Proteins in Molecular Chaperoning Process. "Protein and Peptide Letters", 16, (2009), p.613-622.
  A.24 S.Kocabıyık, İ.Özdemir, P.Zwickl, S.Özdoğan, Molecular Cloning and co-expression of Thermoplasma volcanium proteasome subunit genes. "Protein Expression and Purification", 73, (2010), p.223-230.
  A.25 Semra Kocabıyık, Sema Aygar, Improvement of protein stability and enzyme recovery under stress conditions by using a small HSP (tpv-HSP 14.3) from Thermoplasma volcanium. "Process Biochem. /doi:10.1016/j.procbio.2011.11.014", (2011), p.1-8.
  A.26 Aygar, G, M Kaya, N Özkan, S Kocabıyık, M Volkan, Preparation of silica coated cobalt ferrite magnetic nanoparticles for the purification of histidine-tagged proteins. "Journal of Physics and Chemistry of Solids", 87, (2015), p.64-71.
 

Conference Papers

  A.1 Semra Kocabiyik, Bilge Erdem, Ertug Sezmis, Analysis of the Genomic Organizations of Dehalogenase Genes in Pseudomonas sp. Isolates Using Gene Probe /PCR Analysis. "25thFederation of European Biochemical Societies,FEBS'98 Congress Book", (1998), p.188.
  A.2 Semra Kocabiyik, Ipek Erduran, Engineering of Citrate Synthase from Thermoplasma acidophilum by Site-Specific Mutagenesis to Investigate the Mechanisms of Thermostability. "18th International Congress of Genetics,Congress Book", (1998), p.32.
  A.3 Ipek Erduran, Semra Kocabiyik, Amino Acid Substitutions in the Subunit Interface Enhancing Thermostability of Thermoplasma acidophilum Citrate Synthase. "25th Federation of European Biochemcal Societies,FEBS'98 Congress Book", (1998), p.124.
  A.4 Erduran,I and Kocabiyik,S, Effects of glycine subtitution in subunşt interface helices on stabillity of Thermoplasma acidophilum citrate syntahse . "Biochimie (supplement)", 81, (1999), p.356.
  A.5 Erdem,B,and Kocabiyik,S, Thermostable Protease activiies of Thermoacidophilic Bacteria and Archaea Isolated from natural solfataic hot-springs in Turkey. . "Biochimie (supplement)", 81, (1999), p.355.
  A.6 Su,E, Kocabiyik,and Arinç,E, Induction of CYP1A1 protein ,catalytic activity, in the liver of microsomes of Lisa saliens. "Biochimie (supplement)", 81, (1999), p.117.
  A.7 S.Kocabıyık, İ.Erduran, The Effects of External Factors on the Activities of mutant Thermoplasma Citrate Synthase. "18th International Union of Molecular Biology and Biotechnology Congress, Abatract Book", (2000).
  A.8 Kocabıyık,S.and Özdemir,İ, Differential Amplification of 16S rDNA Sequences of Archaea and Bacteria from Solfataric Hot-Springs in Turkey. "18th IUBMB Congress Book", (2000), p.550.
  A.9 Kocabıyık,S., Ozdemir,I, 20S proteasome complex from Thermoplasma volcanium.. "Abstracts of 27th Meeting of FEBS, European J.Biochem", 268, (2001), p.199.
  A.10 Ozdemir,I., Kocabıyık,S, Purification and Characterization of a Heat Stable Serine Protease from Thermophilic Archaeabacterium. "Abstracts of 27th Meeting of FEBS, European J.Biochem", 268, (2001), p.193.
  A.11 Arınç,E., Koccabıyık,S., Şen,A.., Su,E, Biomonitoring of toxic, carcinogenic llutants by molecular and biochemical responses of fish cytochrome P4501A1 (CYP1A1) along the Izmir Bay on the Mediterranean Sea.. "Rapp.Comn.int.Mer Médit", 36, (2001), p.179-180.
  A.12 Arınç,E., Kocabıyık,S., Şen,A., Su,E, Biomonitoring of toxic, carcinogenic pollutants by molecular and biochemical responses of fish cytochrome P4501A1 (CYP1A1) along the Izmir Bay on the Mediterranean Sea.. "36th CIESM Congress,", 36, (2001), p.179-180.
  A.13 Ç.Çekiç and S.Kocabıyık:, Cloning of Citrate Synthase Gene from Thermoplasma volcanium. (Abstract no. 465).. "28th Meeting of the Federation of European Biochemical Societies. EJB, Suppl. 1", 269, (2002), p.114.
  A.14 S.Kocabıyık and G.Seyit:, Cloning of Two Subunit Genes of Thermoplasma volcanium.. "28th Meeting of the Federation of European Biochemical Societies.EJB, Suppl. 1", 269, (2002), p.114.
  A.15 S.Gündemir and S.Kocabıyık, Effects of Polyols on Thermal Stability of Citrate Synthase from Thermoplasma acidophilum.. "28th Meeting of the Federation of European Biochemical Societies. EJB, Suppl. 1", 269, (2002), p.113.
  A.16 H.Özel and S.Kocabıyık, A Thermophilic Extracellular Acid Protease from Thermoplasma volcanium. İstanbul, Turkey, October 20-25, 2002. (Abstract no. 245). "28th Meeting of the Federation of European Biochemical Societies. EJB, Suppl. 1", 269, (2002), p.113.
  A.17 B.Demirok, S.Kocabıyık, Energy depenedent proteases in heat-shock response of thermoacidophilic archaeon Thermoplasma volcanium.. "BAGECO 8, Lyon,France,Poster Book.Poster no.P30.", (2005), p.86.
  A.18 S.Kocabıyık, Ç.Çekiç, Citrate synthases from organisms with diverse optimum growth temperatures.. " BAGECO 8, Lyon,France, Poster Book. Poster no.P16.", (2005).
  A.19 B.Koyuncu, H.Özel, S.Kocabıyık, Cloning and expression of a pepstatin insensitive acid protease from T.volcanium in E.coli.. "30th FEBS Congress and 9th IUBMB Conference, The FEBS Journal, Poster no. B2-027P.", Vol.272, (2005), p.156.
  A.20 G.Baydar, S.Kocabıyık, Biochemical characterization of thermoplasma volcanium recombinant 20S proteasome and its regulatory subunit.. "30th FEBS Congress and 9th IUBMB Conference, The FEBS Journal, Poster no. B4-007P.", 272, (2005), p.176.
  A.21 B.Koyuncu, B.Demirok, S.Kocabıyık, Purification and characterization of archaeal 6XHis tagged recombinant proteases. "The FEBS Journal , 31st FEBS Congress 24-29 June , 2006 İstanbul PP1064", 273, (2006), p.361.
  A.22 S.Kocabıyık, B.Demirok, G.Baydar, Programmed proteolytic machineries of Thermoplasma volcanium. "20th IUBMB International Cong.of Biochem. and Mol. Biol.Congress, June 18-23 Kyoto , Japan", (2006), p.696.
  A.23 Kocabıyık S., Füsun Doldur, Burçak Demirok, Differential Expression of Archaeal Hsp60 and CDC48 Homologue VAT Genes in Heat Shock.. "The FEBS Journal, Suppl.1 Abstracts of 32rd FEBS Congress Molecular Machines, July7-12 , Vienna", 274, (2007), p.196.
  A.24 Koyuncu, B and S. Kocabıyık, Cloning and Expression of Hsp20 Related Small Heat Shock Proteins of Thermoplasma volcanium. "The FEBS Journal, Abstracts of 32rd FEBS Congress Molecular Machines, July 7-12 , Vienna, Austria.", 274, (2007), p.195.
  A.25 S.Karabıçak, S.Kocabıyık, M. Volkan, Specific Detection of Human Proteasome by SERS Gene Probe Technique. "13th European conference on application of surface and interface analysis, ECASIA,2009", (2009).
  A.26 S.Kocabıyık., S.Aygar., B.Koyuncu, Improving protein stability and enzyme recovery under stress conditions by use of recombinant molecular chaperones.. "’14th international biotechnology symposium and exhibition, Italy, Rimini, 14-18 September 201", (2010), p.p-1.101.
  A.27 S.Kocabıyık, S.Aygar, Stress induced changes in the oligomeric assembly and expression of a small heat shock protein from thermoacidophilic archaeon Thermoplasma volcanium. "4th Congress of European Microbiologists, FEMS 2011", (2011), p.Poster no 249.
  A.28 Kocabiyik, S.; Yilmaz, Tulay, Genome-wide transcriptional response of the thermoacidophilic archaeon, Thermoplasma volcanium to environmental stress. "FEBS JOURNAL 22nd IUBMB Congress/37th FEBS Congress Seville", 279, (2012), p.501.
  A.29 Yilmaz, T.; Kacar, S.; Kocabiyik, S, Altered gene expression patterns of Thermoplasma volcanium 20S proteasome-VAT complex proteins in stress response. ": FEBS JOURNAL 22nd IUBMB Congress/37th FEBS Congress Seville", 279, (2012), p.499-500.
  A.30 Volkan, M.; Kocabiyik, S.; Akpinar, Y.; et al., Determination of proteasome activity using surface enhanced raman scattering (SERS) spectroscopy. "FEBS JOURNAL 22nd IUBMB Congress/37th FEBS Congress Seville Spain", 279, (2012), p.351.
  A.31 Uzun, C.; Kocabiyik, S.; Volkan, M, Application of SERS nanotag labeled probes for DNA studies. "FEBS JOURNAL 22nd IUBMB Congress/37th FEBS Congress Seville", 279, (2012), p.350-351.
  A.32 Kocabıyık S , Sheraj I, Heat-Induced Structural Dynamics of a Thermoacidophilic Small Heat- Shock Protein sHSP14.3; Functional Implications. "38th Congress of the Federation-of-European-Biochemical-Societies Saint Petersburg FEBS JOURNAL", 280, (2013), p.139.
  A.33 S. Kocabıyık, I. Sheraj, Effects of K87 Mutations in the Alpha–Crystallin Domain of Tpv sHSP 14.3 on Oligomerization and in-vitro Chaperone Activity. "16th European Congress on Biotechnology in Edinburgh, 13-16 July 2014", (2014).
  A.34 S. Zabcı, S. Kocabıyık, Gene Expression Profiling of Thermoplasma volcanium under Extreme Stress Conditions. "16th European Congress on Biotechnology in Edinburgh, 13-16 July 2014", (2014).
  A.35 Kocabiyik, S et al, Importance of salt bridges in the dimer interface of Tpv sHSP14.3 for oligomere assembly and chaperone function . "40th Congress of the FEBS -Berlin, GERMANY,JUL 04-09 FEBS JOURNAL", 282 SI, (2015), p.332.
  A.36 Zabci, S.; Celebi, M.; Kocabıyık, S., Gene expression profile of Thermoplasma volcanium GSS1 under mild and severe oxidative stress . " 40th Congress of the FEBS -Berlin, Germany, Jul 4-9 FEBS JOURNAL", 282 SI, (2015), p.75.
  A.37 Sema Zabci, Semra Kocabıyık, Effect of N-teminal extension of small heat shock protein, Tpv HSP 14.3 on its molecular chaperone activity. "New Biotechnology 33S (2016) S1–S213", 33S, (2016), p.98.
  A.38 Semra Kocabiyik, Sema Zabci, Alpha crystallin domain mutations increase holdase capacity of the archeal small heat shock protein, Tpv HSP 14.3 . "New Biotechnology 33S (2016) S1–S213", 33S, (2016), p.103.
  A.39 A. Rafiq, S. Zabci, Y. Kaçer, S. Kocabiyik,, Temperature dependent variations in oligomer status of an archeal small heat shock protein, TpvHSP14.3. "BioMicroWorld Abstract Book", (2017), p.335.
  A.40 Semra Kocabıyık, Sema Zabcı, Tülay Y. Swenson, Gene Expression analysis of thermoacidophilic archeaon Thermoplasma volcanium GSS1 under mild- and severe-pH stress. "BioMicroWorld 2017 Book of Abstracts", (2017), p.321.

Translation of a Book or Chapter in a Book

Review of a Book

  A.1 H.Geçkil, C. Tamerler,,Ö.Yeşilada, S.Kocabıyık, I.Yuluğ, F.Köçkar, .., Moleküler Genetik Teknikleri. "Moleküler Hücre Biyolojisi", (2011), p.166-210.

Publications (NATIONAL)

 

Journal Papers

  A.1 Kocabıyık, S and N.G. Alaeddinoglu., A Study on the Enrichment of Whey with Nitrogen Through Fermentation. "Doga TU.J.Biol", 9(3), (1985), s.574-581.
  A.2 Kocabıyık, S and N.G.Alaeddinoglu., Epidemiological and Practical Aspects of Enzyme Mediated Aminoglycoside Resistance. "Hacettepe Medical Journal", 20, (1987), s.185-189.
  A.3 Kocabıyık,S and N.G. Alaeddinoglu., Determination of Aminoglycoside Modification Enzymes by "MIC-Ratio" Method and its Comparison with Radioactive Assay. "Hacettepe Medical Journal", 21(3), (1988), s.145-156.
  A.4 Kocabıyık, S., Resistance to Aminoglycoside Antibiotics. "J. ANKEM", 2(3), (1988), s.203-206.
  A.5 Kocabıyık, S., Plasmid Profiles of Gentamicin Resistant Gram-Negative Bacilli. "Hacettepe Medical Journal", 22(2), (1989), s.79-86.
  A.6 Kocabıyık,S and N.G.Alaeddinoglu., Cross - Resistance Patterns for Aminoglycosides Among the Clinical Strains of Enterobacteriaceae and Pseudomonas. "Doga TU.J.Biol", 13(1), (1989), s.35-46.
  A.7 Kocabıyık, S., Isolation and Preliminary Characterization of Dehalogenase-I Enzyme from Soil Pseudomonas. "Doga TU.J.Biol.", 13(2), (1989), s.88-96.
  A.8 Kocabıyık, S., Biodegradation of Halogenated Hydrocarbons. "J.KUKEM", 12(1), (1989), s.15-28.
  A.9 Kocabıyık, S and E. Ergin., Screening of Pseudomonas aeruginosa Clinical Isolates for Elastase Activity. "Doga TU. J. Biology", 19, (1995), s.91-98.
  A.10 Kocabıyık, S and S. Turkoglu., Elastase from Pseudomonas aeruginosa SES938 - 1:Properties as a Metalloproteinase. "TU J Biochem", 19(2), (1995), s.9-18.
  A.11 Sagiroglu, A.K and S.Kocabıyık, Preparation of a Nonradioactive DNA Probe for Detection of APH (3´)-II Gene. "Turkish Journal of Medical Sciences", 26, (1996), s.425-429.
  A.12 Erduran,I and S. Kocabıyık., Purification of the Recombinant Cysteine-43 Mutant of Citrate Synthase from Thermoplasma acidophilum and its Modification by 5,5’Dithiobis (2-Nitrobenzoic acid) . "T.J.Biochemistry", 21, (1996), s.11-21.
  A.13 Semra Kocabiyik, Ezgi Ergin, Biochemical Characterization of Elastase from Pseudomonas aeruginosa SES 938-I.. "Doga, Turkish Journal of Biology", 22, (1998), s.181-188.
  A.14 Erduran,I and Kocabiyik,S, Purification and caharacterization of cysteine-43 mutanat citrate synthase from Thermoplasma acidophilum.. "T.J of Biology,Doga", 23, (1999), s.423-431.
 

Conference Papers

  A.1 Semra Kocabiyik, Ipek Erduran, The Analysis of Dimer Interface Interactions of Citrate Synthase from Thermoplasma acidophilum by Site-Specific Mutagenesis. "Abstract Book(Advanced Summer School on Enzymology)", (1997), s.4-5.
  A.2 Gürol Süel, Semra Kocabiyik, Cloning and Expression of a Haloacid Dehalogenase from Pseudomonas sp.SEC 896 in E.Coli.. "Enzymology Summer School/Abstract Book", (1997), s.6-7.
  A.3 Semra Kocabiyik, Production of Industrial Enzymes by Gene Technology. "Proceedings of Advanced Summer School on Enzymology, Ed.A. Telefoncu", (1997), s.177-192.
  A.4 Semra Kocabiyik, Enzymes in Genetic Engineering. "Proceedings of Advanced Summer School on Enzymology, Ed.A.Telefoncu", (1997), s.387-399.
  A.5 S.Kocabıyk, İ.Özdemir, Isolation of thermophilic Archaea and Bacteria from natural hot springs in Turkey and cloning of an Archaea Originated serin protease gene. "Turkey Agricultural Research project Symposium, Proceedings", (2000), s.16-17.
  A.6 E.Arınç, A.Bozcaarmutlu, A.Şen, S.Kocabıyık, İzmir Körfezindeki Toksik Karsinojenik Organik Kirliliğin Biyoteknolojik Yöntemlerle İzlenmesi, Boyutu ve Ekotoksikolojik Sonuçları. "Türkiye Kıyı ve Alanları IV. Ulusal Konferansı, Türkiye Kıyıları 02 Konferansı Bildiriler Kitabı", (2002), s.889-902.
  A.7 G.Seyit, İ.Özdemir, and S.Kocabıyık., Isolation, Purification and Cloning of Alkaline Serine Proteases from a Thermophilic Archaeon,. "Thermoplasma volcanium. 17th National Biochemistry Congress, .Abstact Book,", (2002), s.127.
  A.8 E.Su, S.Kocabıyık and E.Arınç., Induction of Feral Fish (Lisa saliens) CYP1a1mRNA: A Sensitive Method for assessing Activation of Chemical Carcinogenesis in the Aquatic Environment.1. Deasgn of an Oligo DNA Probe Specific for Fish CYP-1A1 mNA.. "17th National Biochemistry Congress, Abstract Book", (2002), s.482.
  A.9 İ.Özdemir and S.Kocabıyık., Isolation and Characterization of 20S Proteasome from Thermoplasma volcanium.. "17th National Biochemistry Congress, 24-27 July, 2002,Abstract Book,", (2002), s.422.
  A.10 S.Kocabıyık., H.Ozel and B.Koyuncu, Exrpession of recombinant thermopsin gene from Thermoplasma volcanium in E.coli.. "XXXI. Turkısh Microbiology Congress, 19-23 Sept. 2004, Kuşadası,Aydın.", (2004), s.382.
  A.11 S.Kocabıyık., İ.Özdemir and B.Demirok, Purification of a serine protease enzyme from Thermoplasma volcanium and prooduction as a recombinant protein in E.coli.. "XXXI. Turkısh Microbiology Congress, 19-23 Sept. 2004, Kuşadası,Aydın.", (2004), s.391.
  A.12 S.Kocabıyık., İ.Özdemir and G.Baydar, Recombinant 20S Proteasome of Thermoplasma volcanium and its Regulation.. "XXXI. Turkısh Microbiology Congress, 19-23 Sept. 2004, Kuşadası,Aydın.", (2004), s.252.
  A.13 B.Koyuncu, S.Kocabıyık, Expression of a thermostable recombinant acid protease in E.coli.. "XIV. National Biotechnology Congress, Eskişehir. Presentation and Poster Book.", (2005), s.608.
  A.14 Kocabıyık, B.Demirok, Cloning and expression of Clp P -like and membrane bound serine protease genes of Thermoplasma volcanium in E.coli.. "XIV. National Biotechnology Congress,Eskişehir. Presentation and Poster Book", (2005), s.609.
  A.15 Nuriye Korkmaz, Pınar Çalık, Semra Kocabıyık, Design of a Hybrid Streptokinase Construct and Its Production as an Extracellular Recombinant Protein in Bacillus sp. "1st Tarık Somer Symposium", (2007).
  A.16 Elif Çevik, Semra Kocabıyık, Modulation of Activity of 20S Proteasome by a Cdc48 Homolog Regulatory Protein.. "", (2008).
  A.17 Semra Kocabıyık., Biyomoleküllerin yapı-fonksiyon analizi: Rasyonel ilaç tasarımı.. "", (2008).
  A.18 Füsun Doldur, Semra Kocabıyık., Şaperonoterapide etkin olabilecek özgün rekombinant moleküler şaperoninlerin üretilmesi.. "13. Ulusal Biyomedikal Mühendisliği Toplantısı Bildirileri", (2008).
  A.19 S.Aygar., S.Kocabıyık, Rekombinant küçük ısı şoku proteinlerinin E.coli hücrelerinin ısı direncine etkisi. "20 Ulusal Biyoloji Kongresi, 21-25-06-2010 , Denizli", (2010), s.1021-1022.
  A.20 C. Uzun, S. Karabıçak, S. Kocabıyık, M.Volkan, Yüzeyde güçlendirilmiş Raman sıçraması (YGRS) metodu ile proteazom DNA'sının tanınması. "29. Ulusal Kimya Kongresi, Bildiri özetleri kitabı", (2017), s.473.
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