Prof.Dr. ÜNAL ERKAN MUMCUOĞLU
GRADUATE SCHOOL OF INFORMATICS
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Education

  Bachelor's, Middle East Technical University, Electric-electronic. Eng.
  Master's, BILKENT, Electric-electronic. Eng.
  Doctorate, University of Southern California, Electric-electronic. Eng.

Publications (INTERNATIONAL)

Journal Papers

  A.1 Celasun B, Mumcuoglu EÜ, Kalkan H, A Simulation Study on the Sampling of Sentinel Lymph Nodes. "Analytical and Quantitative Cytology and Histology", 27, (2005), p.187-194.
  A.2 H.Ogul, E.Mumcuoglu, Protein solvent accessibility prediction using support vector machines and sequence conservations. "Lecture Notes in Artificial Intelligence", 3949, (2006), p.141-148.
  A.3 Mumcuoğlu EÜ, Nar F,Yardımcı Y,Koçak U,Ergün EL,Volkan Salancı B,Uğur O, Erbas B, Simultaneous Surface Registration of Ictal, Interictal SPECT and MR Images for Epilepsy Studies. "Nuclear Medicine Communications", 27, (2006), p.45-55.
  A.4 H.Ogul, E.Mumcuoglu, SVM-based Detection of Distant Protein Structural Relationships Using Pairwise Probabilistic Suffix Trees. "Computational Biology and Chemistry", 30, (2006), p.292-299.
  A.5 Oğul, H., Mumcuoğlu EÜ, A discriminative method for remote homology detection based on n-peptide compositions with reduced amino acid alphabets. "BioSystems", 87, (2007), p.75-81.
  A.6 H.Ogul, E.Mumcuoglu, Subcellular Localization Prediction with New Protein Encoding Schemes. "IEEE/ACM Transactions on Computational Biology and Bioinformatics", 4, (2007), p.227-232.
  A.7 Konukseven EI, Onder ME, Mumcuoglu E, Kisnisci RS, Development of a Visio-Haptic Integrated Dental Training Simulation System. "JOURNAL OF DENTAL EDUCATION", 74, (2010), p.880-891.
  A.8 EU Mumcuoglu, FM Bozkurt, M Aslan, E Sener, O Ugur, Computerized scar detection on renal cortical scintigraphy images.. "Nuclear Medicine Communications", 32, (2011), p.1070-1078.
  A.9 EU Mumcuoglu, R. Hassanpour, SF Tasel, G. Perkins, ME Martone, MN Gurcan, Computerized detection and segmentation of mitochondria on electron microscope images. "Journal of Microscopy", 246, (2012), p.248, 265.
  A.10 Kale EH, Mumcuoglu EU, Hamcan S, Automatic segmentation of human facial tissue by MRI-CT fusion: a feasibility study. "Computer Methods and Programs in Biomedicine", 108, (2012), p.1106, 1120.
  A.11 Mumcuoğlu EU, Long FR, Castile RG, Gurcan MN, Image analysis for cystic fibrosis: computer-assisted airway wall and vessel measurements from low-dose, limited scan lung CT images.. "J Digit Imaging", 26, (2013), p.82-96.
  A.12 TASEL FARIS SERDAR, MUMCUOGLU ÜNAL ERKAN, ZARE HASSANPOUR REZA, Perkins Guy, A validated active contour method driven by parabolic arc model for detection and segmentation of mitochondria. "Journal of Structural Biology", (2016).
  A.13 Sener Emre, MUMCUOGLU ÜNAL ERKAN, HAMCAN SALIH, Bayesian segmentation of human facial tissue using 3D MR-CT information fusion, resolution enhancement and partial volume modelling. "Computer Methods and Programs in Biomedicine", (2016).
 

Conference Papers

  A.1 B. Gulden, E. Mumcuoglu, N. Baykal, A GIS System For Ambulatory Transport. "BIOMED 2003, 10th Biomedical Science and Technology Symposium", (2003), p.P83.
  A.2 Erhan ergut, Yasemin Yardimci, Erkan Mumcuoglu, Ozlen Konu, Analysis of Microarray Images Using FCM and K-means clustering algorithms. "International conference of Computational Intelligence", 1, (2003), p.8.
  A.3 E. Mumcuoglu, F. Nar, Y. Yardimci, U. Kocak, E.L. Ergün, B. Volkan, Ö. Uğur, B., Simultaneous Triple-Registration of Ictal SPECT, Interictal SPECT and MR Images for Epilepsy Studies: Method and Validation. "Proceedings of the International Europian Signal Processing Conference (Eusipco)", (2005).
  A.4 Oğul, H., Mumcuoğlu EÜ, Discriminative Remote Homology Detection Using Maximal Unique Sequence Matches. "IDA 2005, Lecture Notes in Computer Science", 3646, (2005).
  A.5 H Oğul, EÜ Mumcuoğlu, Prediction of Protein Subcellular Localization Using Support Vector Machines and Probabilistic Suffix Trees. "Proceedings of International Symposium on Health Informatics and Bioinformatics", (2005), p.59-62.
  A.6 F. Nar, E. Mumcuoglu, Y. Yardimci, U. Kocak, Simultaneous Registration of Ictal SPECT, Interictal SPECT and MR Images for Epilepsy Studies: Method and Simulations. "Proceedings of the IASTED International Conference on Biomedical Engineering", (2005), p.11-16.
  A.7 K Kuru, B Celesun, E Mumcuoğlu, The Use of Lab Color Model for Sharpening and Optimization of Digital Images of Hematoxylin & Eosin Stained Microscopical Materials. "Proceedings of International Symposium on Health Informatics and Bioinformatics", (2005), p.210-218.
  A.8 V. Kılıç, U. Koçak, İ. Konukseven, E. Mumcuoğlu, GPU Supported Haptic Device Integrated Dental Simulation Environment. "Eurohaptics", (2006).
  A.9 E. Mumcuoğlu, F. Nar, Ö. Uğur, MF. Bozkurt, M. Aslan, Image-based retrieval system and computer-aided diagnosis system for renal cortical scintigraphy images. "SPIE Medical Imaging Conference", (2008).
  A.10 Mumcuoglu EU, Prescott J, Baker BN, Clifford B, Long F, Castile R, Gurcan MN., Image analysis for cystic fibrosis: Automatic lung airway wall and vessel measurement on CT images. "Conf Proc IEEE Eng Med Biol Soc.", 1, (2009), p.3545-3548.
  A.11 Serdar Tasel, Reza Hassanpour, Erkan U. Mumcuoglu, Guy Perkins, Maryann Martone, Automatic detection of mitochondria from electron microscope tomography images: a curve fitting approach. "SPIE Medical Imaging Conference", 9034, (2014).
  A.12 Salih Caner, Ü. Erkan Mumcuoğlu, Nigar Şen, PREDICTING THE LEVEL OF KNEE OSTEOARTHRITIS BY USING DIMENSION REDUCTION TECHNIQUES ON TIME SERIES FEATURES OF GAIT DATA. "IBMEC 2015 - International Biomedical Engineering Conference, Northern Cypress", (2015).

Publications (NATIONAL)

 

Conference Papers

  A.1 F. Nar, C. Gencel, B. Volkan, E. Mumcuoglu, Y. Yardimci, A. Erol, O. Ugur, B. Er, 3-boyutlu ve Moduler Tibbi Imge Analizi Yazilimi. "11. Sinyal Isleme ve Iletisim Uygulamalari Kurultayi", (2003), s.753-756.
  A.2 H. Oğul, Ü.E. Mumcuoğlu, Protein Ailelerinde En Büyük Ortak İkincil Yapı Eşleşmelerinin Bulunması. "Biyomedikal Müh. Toplantısı (BIYOMUT), İstanbul.", (2004), s.107-113.
  A.3 B. Volkan, E.L. Ergün, F. Nar, E. Mumcuoğlu, Y. Yardımcı, A. Cila, S. Saygı, ..., Geliştirdiğimiz Yazılım ile Epilpsi odağı oluşturulmuş beyin fantomu kullanılarak Siscom algoritmasının uygulanması: Analyze 5.0 ile sonuçlarının kıyaslanması. "6. Intern. Congress of Nuclear Oncology and 17. National Congress of Turkish Nuclear Med.", 13, (2004), s.10.
  A.4 K. KURU, H. GÜL, G. GÜRSEL, K. ARDA, E. MUMCUOĞLU, N. BAYKAL, Sağlık Hizmetlerinde Kaynakların Doğru Kullanımında Bilgisayar Benzetim Yönteminin Kullanılması: Bir Poliklinik Çalışması. "2. Ulusal Tıp Bilişimi Kongresi/Medical Informatics 2005 Turkey Bildiriler/Proceedings", (2005), s.14-20.
  A.5 F. NAR,E. Mumcuoğlu,U. Koçak,Ö. Uğur,F. Bozkurt,M.Aslan,K.Güneştepe,M.Cerrahoglu, Sintigrafik Böbrek Görüntüleri için İçerik Tabanlı Arama Sistemi. "Sinyal Isleme ve Uygulamalari Kongresi", (2006).
  A.6 P. YILDIRIM, UE. MUMCUOĞLU, MR. TOLUN, MN. ÖZMEN, M. ULUDAĞ, Klinik Veritabanlarında Etkin Veri Madenciliği Amacıyla Çoklu-ilişkisel Veri Madenciliği Yaklaşımı. "5. Ulusal Tıp Bilişimi Kongresi/Medical Informatics, Antalya", (2008).
  A.7 E. Şener, E. Mumcuoğlu, E. Kale, V Akgün, BT ve MR Görüntülerini 3 Boyutta Çakıştırarak ve Birlikte Kullanarak, Otomatik ve Yarı-Otomatik Bölütleme Yöntemleri Geliştirilmesi ve Bu Yöntemlerin Kafa Modeli Oluşturma ve Yüz Mimik Kaslarının Bölütlenmesine Uygulanması. "5. Ulusal Tıp Bilişimi Kongresi/Medical Informatics, Antalya", (2008).
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