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Prof.Dr. MEHMET VOLKAN ATALAY
FACULTY OF ENGINEERING
PublicationsResearchMembership & Awards
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Phone :  +90312210 2080
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Education

  Bachelor's, Middle East Technical University, Electric-electronic. Eng.
  Master's, Middle East Technical University, Electric-electronic. Eng.
  Doctorate, Universite Rene Descartes-Paris V, Computer Science

Publications (INTERNATIONAL)

Journal Papers

  A.1 Atalay, V. and Yılmaz, M.U., A Matching Algorithm Based on Linear Features. "Pattern Recognition Letters", 19, (1998), p.857-867.
  A.2 Oztop, E., Mulayim, A.Y., Atalay, V. and Yarman-Vural, F., Repulsive Attractive Network for Baseline Extraction on Document Images. "Signal Processing", 75, (1999), p.1-10.
  A.3 Gerek, O.N., Cetin, A.E., Tewfik, A. and Atalay, V., Subband Domain Coding of Binary Textual Images for Document Archiving. "IEEE Transactions on Image Processing", 8, (1999), p.1438-1446.
  A.4 Ongun, G., Halıcı, U., Leblebicioğlu, K., Atalay, V. Beksaç, S. and Beksaç, M., Automated Contour Detection in Blood Cell Images by an Efficient Snake Algorithm. "Nonlinear Analysis-Theory Methods & Applications", 47, (2001), p.5839-5847.
  A.5 Özer, Ö.F., Özün, O., Tüzel, C.Ö., Atalay, V. and Çetin, A.E., Vision-based Single-stroke Character Recognition for Wearable Computing. "IEEE Intelligent Systems", 16, (2001), p.33-37.
  A.6 Duygulu, P. and Atalay, V., A Hierarchical Representation of Form Documents for Identification and Retrieval. "International Journal of Document Analysis and Recognition", 15, (2002), p.17-127.
  A.7 Baskan, S., Bulut, M.M. and Atalay, V., Projection Based Method for Segmentation of Human Faces and its Evaluation. "Pattern Recognition Letters", 23, (2002), p.1623-1629.
  A.8 A.Y. Mulayim, Y. Ulas, V. Atalay, Silhouette-based 3D Model Reconstruction from Multiple Images. "IEEE Trans. On Systems, Man, and Cybernetics-Part B", 33, (2003), p.582-591.
  A.9 U. Yilmaz, A.Y. Mulayim, V. Atalay, An Image based Inexpensive 3D Scanner. "Int. Journal of Image and Graphics,", 3, (2003), p.235-264.
  A.10 C. Guray, N. Celebi, V. Atalay, A.Gunhan, Ore-Age: An Hybrid system for Assisting and Teaching Mining Method Selection. "Expert Systems with Applications Journal", 24, (2003), p.261-271.
  A.11 M. Musa, D. de Ridder, R. Duin and V. Atalay, Almost Autonomous Training of Mixtures of Principal Component Analyzers. "Pattern Recognition Letters", 25, (2004), p.1085-1095.
  A.12 I.A. Erdem, M.E. Erdem, V. Atalay, A.E. Çetin, Vision-based Continuous Graffiti-like Text Entry System. "Optical Engineering", 43, (2004), p.553-558.
  A.13 R. Hassanpour and V. Atalay, Camera auto-calibration using a sequence of 2D images with small rotations. "Pattern Recognition Letters", 25, (2004), p.989-997.
  A.14 Volkan Atalay, Rengul Cetin-Atalay, Implicit Motif Distribution based Hybrid Computational Kernel for Sequence Classification. "Bioinformatics", 21, (2005), p.1429-1438.
  A.15 A. Teke, V. Atalay, Texture Classification and Retrieval Using the Random Neural Network Model. "Computational Management Science", 3, (2006), p.193-205.
  A.16 R. Hassanpour, V. Atalay, An Experimental Study on the Sensitivity of Auto-Calibration to Projective Camera Models Parameters. "Optical Engineering", 45, (2006), p.047002.
  A.17 B. Otlu, V. Atalay, R. Hassanpour, Relative Consistency of Projective Reconstructions Obtained from the Same Image Pair. "International Journal of Pattern Recognition and Artificial Intelligence,", 20, (2006), p.649-664.
  A.18 Ö.S. Saraç, Ö. Gürsoy-Yüzügüllü, R. Çetin-Atalay, V. Atalay, Subsequence based feature map for protein function classification. "Journal of Computational Biology and Chemistry", 32, (2008), p.122-130.
  A.19 O.S. Sarac, V. Atalay, R. Çetin-Atalay, GOPred: GO Molecular Function Prediction by Combined Classifiers. "PLoS ONE", 5, (2010), p.e12382.
  A.20 Z. Işık, V. Atalay, R. Çetin-Atalay, Evaluation of Signaling Cascades Based on the Weights from Microarray and ChIP-seq Data. "Journal of Machine Learning Research W&C Proceedings", 8, (2010), p.44-54.
  A.21 L. Çarkacıoğlu, R. Çetin-Atalay, Ö. Konu, V. Atalay, T. Can, Bi-k-Bi Clustering: Mining Large Scale Gene Expression Data Using Two-Level Biclustering. "International Journal of Data Mining and Bioinformatics", 4, (2010), p.701 - 721.
  A.22 Isik Z, Ersahin T, Atalay V, Aykanat C, Cetin-Atalay R., A signal transduction score flow algorithm for cyclic cellular pathway analysis, which combines transcriptome and ChIP-seq data. "Molecular BioSystems", 8, (2012), p.3224-3231.
  A.23 Ersahin T, Carkacioglu L, Can T, Konu O, Atalay V, Cetin-Atalay R., Identification of novel reference genes based on MeSH categories. "PLoS ONE", 9, (2014), p.e93341.
  A.24 GENÇ SERKAN, BASTAN MUHAMMET, GÜDÜKBAY UGUR, ATALAY MEHMET VOLKAN, ULUSOY ÖZGÜR, HandVR: a hand-gesture-based interface to a video retrieval system. "Signal, Image and Video Processing", 9, (2015), p.1717-1726.
 

Conference Papers

  A.1 Atalay, V. and Yılmaz, M.U., Estimation of Rotation between Two Frames of a Scene. "SPIE Aerosense Visual Information Processing VII", (1998).
  A.2 Göktepe, M., Atalay, V., Yalabık, N. and Yalabık, C., Unsupervised Texture Based Image Segmentation by Simulated Annealing with Markov Random Field and Potts Models. "14th International Conf. on Pattern Recognition (ICPR 98)", 1, (1998), p.829-832.
  A.3 Borchani, M., Atalay, V. and Stamon, G., Combining Multiple Tools for Image Retrieval. "IEEE SMC CESA IMACS Multiconference", (1998).
  A.4 Duygulu, P., Atalay, V. and Dinçel, E., A Heuristic Algorithm for Hierarchical Representation of Form Documents. "14th International Conf. on Pattern Recognition (ICPR 98)", 2, (1998), p.1021-1023.
  A.5 Mulayim, A., Yener, Y., Schmitt, F. and Atalay, V., Rotation Axis Extraction of a Turn Table Viewed by a Fixed Camera. "Workshop on Vision, Modelling, and Visualization - VMV'99", (1999).
  A.6 Atalay, V. and Arslan, E., An SGML Based Viewer for Form Documents. "Fourth International Conference Document Analysis and Recognition (ICDAR99)", (1999).
  A.7 Genc, S. and Atalay, V., Texture Extraction from Photographs and Rendering with Dynamic Texture Mapping. "International Conference on Image Analysis and Processing (ICIAP99)", (1999).
  A.8 Duygulu, P. and Atalay, V., Hierarchical Representation of Form Documents for Identification and Retrieval. "SPIE's 12th International Symposium on Electronic Imaging-Document Recognition and Retrieval VII", 3967, (2000).
  A.9 Borchani, M., Atalay, V. and Stamon, G., Texture Based Image Retrieval by Combining Multiple Tools. "The 2000 International Conference on Imaging Science, Systems, and Technology", (2000).
  A.10 Mülayim, A.Y., Atalay, V., Özün, O. and Schmitt, F., On the Silhouette Based 3D Reconstruction and Initial Bounding Cube Estimation. "5th IEEE Int. Fall Workshop on Vision, Modeling and Visualization-VMV 2000", (2000).
  A.11 Dicle, N. and Atalay, V., Image Matching Using Singular Value Decomposition and Godel Coding Scheme. "SPIE's 12th International Symposium on Electronic Imaging-Image and Video Communications and Process", 3974, (2000).
  A.12 Baskan, S., Bulut, M.M. and Atalay, V., Segmentation of Facial Features Using Gradient-based Approach. "SPIE's 13th International Symposium on Machine Vision Applications in Industrial Inspection IX", 4301, (2001), p.52-63.
  A.13 Mülayim, A. and Atalay, V., Multibaseline Stereo Correction for Silhouette-based 3D Model Reconstruction from Multiple Images. "SPIE's 13th International Symposium on Three-Dimensional Image Capture and Applications IV", 4298, (2001), p.143-154.
  A.14 Balcı, K. and Atalay, V., PCA for Gender Estimation: Which Eigenvectors Contribute?. "16th International Conference on Pattern Recognition", 3, (2002), p.363-366.
  A.15 Yaman, M., Atalay, V., Türker, M., Gerek, O.N. and Çetin, A.E., Texture Segmentation by Using Adaptive Polyphase Subband Decomposition. "17th International Symposium on Computer and Information Sciences (ISCIS XVII)", 1, (2002).
  A.16 Yılmaz, U., Mülayim, A. and Atalay, V., Reconstruction of Three Dimensional Models from Real Images. "1st International Symposium on 3D Data Processing, Visualization, Transmission (3DPVT)", 1, (2002), p.554-557.
  A.17 Hassanpour, R. and Atalay, V., Head Modeling with Camera Auto-calibration and Deformation. "7th International Fall Workshop on Vision, Modeling and Visualization-VMV 2002", (2002).
  A.18 Otlu, B., Hassanpour, R. and Atalay, V., Consistency of Projective Reconstructions from an Image Pair. "9th International Workshop on Systems, Signals and Image Processing", (2002).
  A.19 Güray, C., Çelebi, N., Atalay, V. and Gürhan, A., Ore-Age: An agent for Mining Method Selection. "6th IASTED International Conference on Artificial Intelligence and Soft Computing", 1, (2002), p.264-269.
  A.20 Yılmaz, U., Mülayim, A.Y. and Atalay, V., Appearance Reconstruction of Three Dimensional Models from Real Images. "17th International Symposium on Computer and Information Sciences (ISCIS XVII)", 1, (2002).
  A.21 Erdem, A., Erdem, E., Atalay, V. and Çetin, E., Computer Vision Based Unistroke Keyboard. "17th International Symposium on Computer and Information Sciences (ISCIS XVII)", 1, (2002).
  A.22 Hassanpour, R. and Atalay, V., Camera Autocalibration Using a Sequence of 2D Images with Small Rotations and Translations. "17th International Symposium on Computer and Information Sciences (ISCIS XVII)", 1, (2002).
  A.23 M. Ozarar, V. Atalay, R. Cetin-Atalay, Prediction of protein subcellular localization based on primary sequence data. "18th International Symposium on Computer and Information Sciences (ISCIS XVII)", LNCA2869, (2003), p.611-618.
  A.24 G.K. Akinci, S.U. Korkmaz, V. Atalay, A character recognizer for Turkish language. "7th Int. Conf. on Document Analysis and Recognition", 2, (2003), p.1238-1241.
  A.25 I.S. Sen, V. Atalay, Occlusion culling for image based rendering with warping. "Eurographics 2003 Annual Conference of the European Association for Computer Graphics", 1, (2003).
  A.26 M.E. Erdem, I.A. Erdem, V. Atalay, Image based extraction of material reflectance properties of a 3D rigid object. "Eurographics 2003 Annual Conference of the European Association for Computer Graphics", 1, (2003).
  A.27 M.Musa, R.Duin, D. deRidder, V.Atalay, Texture Segmentation Using the Mixtures of Principal Component Analyzers. "18th International Symposium on Computer and Information Sciences (ISCIS XVII)", LNCS 2869, (2003), p.505-512.
  A.28 A. Erdem, E. Erdem, V. Atalay, E. Cetin, Computer vision based unistroke keyboard system and mouse for the handicapped. "Int. Conf. on Multimedia and Expo-ICME 03", (2003).
  A.29 R. Hassanpour and V. Atalay, Delaunay Triangulation based 3D human face modeling from uncalibrated images1. "The First IEEE Workshop on Face Processing in Video", 1, (2004).
  A.30 A. Teke and V. Atalay, Texture Classification and Retrieval Using Random Neural Network Model. "6th Southwest Symposium on Image Analysis and Interpretation", 1, (2004), p.109-113.
  A.31 Serkan Genc, Volkan Atalay, ITouch: Vision-based Intelligent Touch Screen in a Distributed Environment. "Seventh International Conference on Multimodal Interfaces", (2005), p.52-55.
  A.32 L. Carkacioglu, T. Can, O. Konu, V. Atalay, R. Cetin-Atalay, Expression Pattern Analysis of Housekeeping Genes Across Large Number of Microarray Experiments. "5th European Conference on Computational Biology (ECCB)", (2006).
  A.33 O.S. Sarac, V. Atalay, R. Cetin-Atalay, HMM-based subsequence feature map for Protein Classification and Remote Homology Detection. "4th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2006)", (2006).
  A.34 O.S. Sarac, V. Atalay, R. Cetin-Atalay, ubsequence Feature Map for Protein Classification and Remote Homology Detection. "5th European Conference on Computational Biology (ECCB)", (2006).
  A.35 O.Sinan Sarac, O.Gursoy-Yuzugullu, R.Cetin-Atalay and V. Atalay, unction Annotation via a Discriminative Classifier Database on GO hierarchy. "15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2007)", (2007).
  A.36 Z.Sokmen, M.Ozturk, V.Atalay, R.Cetin Atalay, A Hybrid Method For The Identification of Expression Patterns From Microarray Data. "15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2007)", (2007).
  A.37 O.Sinan Sarac, P.Bezek, R.Cetin-Atalay, V.Atalay, Spectral Clustering based Subsequence Feature Map for Protein Classification. "11th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2007)", (2007).
  A.38 O.Sinan Sarac, O.Gursoy-Yuzugullu, R.Cetin-Atalay and V. Atalay, Protein Function Annotation by Subsequence based Feature Map. "Automated Function Prediction (AFP) and Biosapiens Special Interest Group (SIG) meeting at ISMB/ECCB", (2007).
  A.39 O.S. Sarac, R. Cetin-Atalay, V. Atalay, GOPred: Combining classifiers on the GO. "Second International Workshop on Machine Learning in Systems Biology (MLSB08)", 1, (2008), p.59-66.
  A.40 Z. Sökmen, V. Atalay and R.Cetin-Atalay, Progressive Clustering by Integration of Heteregenous Data from Multiple Sources for Target Gene Identification. "Second International Workshop on Machine Learning in Systems Biology (MLSB08)", 1, (2008), p.138.
  A.41 Ayse Gul Yaman, Omer Sinan Sarac, Volkan Atalay, Rengul Cetin-Atalay, Comparision of Transfer and Classification Approaches for Function Annotation from Sequences. "Second International Workshop on Machine Learning in Systems Biology (MLSB08)", 1, (2008), p.143.
  A.42 Serkan Genç and Volkan Atalay, Which Shape Representation Is the Best for Real-Time Hand Interface System?. "Lecture Notes In Computer Science, Proceedings of the 5th International Symposium on Advances in Vis", 5875, (2009), p.1-11.
  A.43 Zerrin Isik, Volkan Atalay and Rengul Cetin-Atalay, Evaluation of Signaling Cascades Based on the Weights from Microarray and ChIP-seq Data. "Third International Workshop on Machine Learning in Systems Biology (MLSB)", (2009), p.45-53.
  A.44 Z. Işık, V. Atalay, C. Aykanat, R. Çetin-Atalay, Data and Model Driven Hybrid Approach to Activity Scoring of Cyclic Pathways. "International Symposium on Computer and Information Sciences (ISCIS 2010)", 62, (2010), p.91-94.
  A.45 Yaman AG, Atalay V, Cetin-Atalay R, Prediction Of Enzyme Classes In A Hierarchical Approach By Using SPMap. "11th European Conference on Computational Biology (ECCB'12)", (2012), p.H29.

Publications (NATIONAL)

 

Conference Papers

  A.1 Duygulu, P., Atalay, V. ve Dinçel, E., Form Document Representation and Identification. "7th Turkish Symposium on Artificial Intelligence and Neural Networks", (1998).
  A.2 Dinçel, E., Atalay, V. ve Duygulu, P., A Form Document Image Parser. "7th Turkish Symposium on Artificial Intelligence and Neural Networks", (1998).
  A.3 Atalay, V., Mülayim, A.Y., Özün, O. and Yılmaz, U., Otomatik Üç Boyutlu Nesne Modelleyici: Internet üzerinde Tanıtım ve Pazarlamada Üçüncü Boyuta Doğru. "Bilişim 2000", (2000).
  A.4 Özün, O, Mülayim, A.Y., Sen, S.I., Çalışkan, K. and Atalay, V., Siluet Tabanlı 3 Boyutlu Nesne Modellemede Nesneyi Kapsayan Başlangıç Küpü Çıkarımı. "IEEE 8. Sinyal İşleme ve Uygulamaları Kurultayı", (2000).
  A.5 Ongun, G., Leblebicioğlu, K., Halıcı, U., Atalay, V., Beksaç, M. and Beksaç, S., Kan Hücrelerinin Çevritlerinin Belirlenmesi için Özelleştirilmiş Hızlı Yılan Algoritması. "IEEE 8. Sinyal İşleme ve Uygulamaları Kurultayı", (2000).
  A.6 Erdoğan, A., Halıcı, U., Leblebicioğlu, K., Atalay, V. and Turhan-Sayan, G., Yapay Sinir Ağları ile Doppler Radar Hedef Sinyalleri Tanıma. "IEEE 8. Sinyal İşleme ve Uygulamaları Kurultayı", (2000).
  A.7 Yılmaz, U., Genç, S., Atalay, V., Halıcı, U. and Leblebicioğlu, K., 3 Boyutlu Nesnelerde Görüntü Tabanlı Doku Geriçatımı Yöntemlerinin Karşılaştırılması. "IEEE 8. Sinyal İşleme ve Uygulamaları Kurultayı", (2000).
  A.8 Mülayim, A.Y., Atalay, V., Leblebicioğlu, K. and Halıcı, U., Çeşitli Bakiış Açılarından 3 Boyutlu Nesne Geriçatımında Siluet ve Stereo Tabanlı Bilgilerin Kullanımı. "IEEE 8. Sinyal İşleme ve Uygulamaları Kurultayı", (2000).
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